UZH - Institut für Computerlinguistik

Dr. Simon Clematide
Office: 5.E.11
Tel.: +41 44 635 71 21
simon.clematide AT cl.uzh.ch

Research Interests

Text Mining (biomedical and political domain, sentiment analysis), Finite-State Methods, Shallow Parsing, Named Entity Recognition, Morphology, Lexicography, Corpus Linguistics, E-Learning, Exploitation of linguistically annotated corpora, German Syntax (coordinated structures).

Projects and Work

Biomedical Text Mining: SASEBio ; Political Text Mining: COSA ; German Sentiment Analysis IGGSA; Sentence Extension Tests (SET): SET ; Web-based Virtual Laboratory for Computational Linguistics CLab

Note:In summer term 2012 I'm working for the competitive intelligence group at Novartis, Horsham (UK). Please contact me by e-mail.

Teaching

Lectures (mostly in German)

VL: Programmiertechniken in der CL I HS 2011 (partly)
VL: Thema "Automatische Erschliessungsverfahren" im Aufbaumodul "Information Retrieval" im MAS Bibliotheks- und Informationswissenschaften Automatische Erschliessung (FS 2011)
VL: Einführung in die Computerlinguistik I (HS 2011 (partly),HS 2010,HS 2009, HS 2008, HS 2007, WS 2006)
VL: Finite-State-Methoden in der Sprachtechnologie(FS 2011,FS 2010)
VL: Morphologie und Lexikographie (FS 2009, FS 2008, SS 2007, SS 2006)
VL: Programmiertechniken in der CL (only final versions) WS 2005 , SS 2005)

Seminars and colloquia (as assistant): (SS 2005, SS 2003, SS 2201, SS 2000, WS2000)

Presentations and Talks

2nd CALBC Workshop: OntoGene at CALBC II and Some Thoughts on the Need of Document-Wide Harmonization, Second CALBC Workshop – 16/17/18 March 2011 – EBI, Hinxton
"Electoral campaigns, relation mining, and dependency parsing: extracting semantic network data from Swiss newspaper articles", together with B. Wüest and D. Laupper, Computer-aided methods of textual analysis RECON WP 6 Workshop, Berlin, 27-28 May 2010
WASSA 2010 (1st Workshop on Computational Approaches to Subjectivity and Sentiment Analysis) ECAI 2010: Evaluation and Extension of a Polarity Lexicon for German
TACOS 2010: Erweiterung des Adjektivbestands eines Polaritätslexikons für Deutsch
LV im Modul IR im MAS Bibliotheks- und Informationswissenschaften 2009
(Colloquium talk in Konstanz from July 2007)
E-Learning in der CL der Universität Zürich (PDF, 925 KB)
Koordination und syntaktische Disambiguierung
Computerlinguistik in Information und Dokumentation (2006)
Automatische Termextraktion (2004 Terminologiekurs ZHW)
Markov Models And PoS Tagging with Markov Models (englisch)
Probabilistic Context-Free Grammars (englisch)
GermaNet und UniNet – Anknüpfen an semantische Netze

Publications

2012 and earlier

This list is generated from the Zurich Open Access Repository and contains all publications up to 2012 (partly in full text):

Schneider, Gerold; Rinaldi, Fabio; Clematide, Simon (2012). Dependency parsing for interaction detection in pharmacogenomics. In: LREC 2012: The eighth international conference on Language Resources and Evaluation, Istanbul, 21 May 2012 - 25 May 2012.

Rinaldi, Fabio; Clematide, Simon; Hafner, Simon (2012). Ranking of CTD articles and interactions using the OntoGene pipeline. In: 2012 {BioCreative} workshop, Washington D.C., 04 April 2012 - 05 April 2012.

Klenner, M; Clematide, S; Petrakis, S; Luder, M (2012). Compositional syntax-based phrase-level polarity annotation for German. In: The 10th International Workshop on Treebanks and Linguistic Theories (TLT 2012), Heidelberg, 06 January 2012 - 07 January 2012, online.

Rinaldi, Fabio; Clematide, Simon; Garten, Yael; Whirl-Carrillo, Michelle; Gong, Li; Hebert, Joan M.; Sangkuhl, Katrin; Thorn, Caroline F; Klein, Teri E; Altman, Russ B (2012). Using ODIN for a PharmGKB re-validation experiment. Database: The Journal Of Biological Databases And Curation, 2012:bas021.

Rinaldi, Fabio; Schneider, Gerold; Clematide, Simon (2012). Relation Mining Experiments in the Pharmacogenomics Domain. Journal of Biomedical Informatics, 45(5):851-861.

Wüest, B; Clematide, S; Bünzli, A; Laupper, D (2011). Electoral Campaigns and Relation Mining: Extracting Semantic Network Data from Newspaper Articles. Journal of Information Technology & Politics, 8(4):444-463.

Clematide, S; Rinaldi, F (2011). Ranking Interactions for a Curation Task. In: 10th International Conference on Machine Learning and Applications and Workshops, Honolulu, Hawaii USA , 18 December 2011 - 21 December 2011, 100-105.

Schneider, G; Clematide, S; Rinaldi, F (2011). Detection of interaction articles and experimental methods in biomedical literature. BMC Bioinformatics, 12(Suppl 8):S13.

Clematide, S; Roth, L (2011). Generating inflection variants of multi-word terms for French and German. In: Conference of the German Society for Computational Linguistics and Language Technology (GSCL) 2011, Hamburg, Germany, 28 September 2011 - 30 September 2011, 33-37.

Klenner, M; Clematide, S; Amsler, M (2011). Semi-automatic test generation for tandem learning. In: Speech and Language Technology in Education, Venice, 24 August 2011 - 26 August 2011.

Tuggener, D; Klenner, M; Schneider, G; Clematide, S; Rinaldi, F (2011). An incremental model for the coreference resolution task of BioNLP 2011. In: BioNLP 2011, Portland, Oregon, USA, 23 June 2011 - 24 June 2011, 151-152.

Clematide, S; Rinaldi, F; Schneider, G (2011). OntoGene at CALBC II and Some Thoughts on the Need of Document-Wide Harmonization. In: Second CALBC Workshop, Hinxton, Cambridgeshire, UK, 16 March 2011 - 18 March 2011, 48-51.

Rinaldi, F; Schneider, G; Clematide, S (2011). Mining complex Drug/Gene/Disease relations. In: Pacific Symposium on Biocomputing Workshop "Mining the Pharmacogenomics Literature", Hawaii, 03 January 2011 - 07 January 2011.

Arighi, C; Roberts, P; Agarwal, S; Bhattacharya, S; Cesareni, G; Chatr-aryamontri, A; Clematide, S; Gaudet, P; Giglio, M; Harrow, I; Huala, E; Krallinger, M; Leser, U; Li, D; Liu, F; Lu, Z; Maltais, L; Okazaki, N; Perfetto, L; Rinaldi, F; Saetre, R; Salgado, D; Srinivasan, P; Thomas, P; Toldo, L; Hirschman, L; Wu, C (2011). BioCreative III interactive task: an overview. BMC Bioinformatics, 12(Suppl 8):S4.

Rebholz-Schuhmann, D; Jimeno, A; Li, C; Kafkas, S; Lewin, I; Kang, N; Corbett, P; Milward, D; Buyko, E; Beisswanger, E; Hornbostel, K; Kouznetsov, A; Witte, R; Laurila, J; Baker, C; Kuo, C; Clematide, S; Rinaldi, F; Farkas, R; Móra, G; Hara, K; Furlong, L; Rautschka, M; Neves, M; Pascual-Montan, A; Wei, Q; Collier, N; Chowdhury, F; Lavelli, A; Berlanga, R; Morante, R; Van Asch, V; Daelemans, W; Marina, J; van Mulligen, E; Kors, J; Hahn, U (2011). Assessment of NER solutions against the first and second CALBC Silver Standard Corpus. Journal of Biomedical Semantics, 2(Suppl 5):S11.

Rinaldi, F; Clematide, S; Schneider, G; Romacker, M; Vachon, Th (2010). ODIN: an advanced interface for the curation of biomedical literature. In: Biocuration 2010, Tokyo, Japan, 11 October 2010 - 14 October 2010.

Rinaldi, F; Schneider, G; Clematide, S; Romacker, M; Vachon, T (2010). OntoGene (Team 65): preliminary analysis of participation in BioCreative III. In: BioCreative III workshop, Bethesda, Maryland, 13 September 2010 - 15 September 2010.

Clematide, S; Klenner, M (2010). Evaluation and extension of a polarity lexicon for German. In: Workshop on Computational Approaches to Subjectivity and Sentiment Analysis (WASSA); Held in conjunction to ECAI 2010 Portugal, Lisbon, Portugal, 17 August 2010 - 17 August 2010, 7-13.

Clematide, S; Rinaldi, F; Schneider, G (2010). OntoGene in CALBC. In: First CALBC Workshop, Hinxton, Cambridgeshire, UK, 17 June 2010 - 18 June 2010, 30-31.

Rinaldi, F; Schneider, G; Kaljurand, K; Clematide, S; Vachon, T; Romacker, M (2010). OntoGene in BioCreative II.5. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 7(3):472-480.

Luder, M; Clematide, S (2010). Constructing a Constructional MWE Lexicon for psycho-conceptual Annotation: Evaluation of CPA and DuELME for Lexicographic Description. In: Dykstra, A; Schoonheim, T. Proceedings of the XIV Euralex International Congress. Leeuwarden, NL, 402-410. ISBN 978-90-6273-850-3.

Rinaldi, F; Schneider, G; Kaljurand, K; Clematide, S (2009). Effective Mining of Protein Interactions. In: Third international symposium on languages in biology and medecine (LBM 2009), Jeju Island, South Korea, 08 November 2009 - 10 November 2009, 115-118.

Searching Answers: Festschrift in Honour of Michael Hess on the Occasion of His 60th Birthday. Edited by: Clematide, S; Klenner, M; Volk, M. Münster, Germany, 2009. ISBN 978-3-86582-955-9.

Clematide, S (2009). A morpho-syntactic generation service for German glossary entries. In: Clematide, S; Klenner, M; Volk, M. Searching Answers: Festschrift in Honour of Michael Hess on the Occasion of His 60th Birthday. Münster, Germany, 33-43. ISBN 978-3-86582-955-9.

Clematide, S R. Koordination im Deutschen und ihre syntaktische Desambiguierung. 2009, University of Zurich, Faculty of Arts.

Kappeler, T; Clematide, S; Kaljurand, K; Schneider, G; Rinaldi, F (2008). Towards automatic detection of experimental methods from biomedical literature. In: Third International Symposium on Semantic Mining in Biomedicine (SMBM 2008), Turku, Finland, 01 September 2008 - 03 September 2008, 61-68.

Rinaldi, F; Kappeler, T; Kaljurand, K; Schneider, G; Klenner, M; Clematide, S; Hess, M; von Allmen, J M; Parisot, P; Romacker, M; Vachon, T (2008). OntoGene in BioCreative II. Genome Biology, 9 (Sup:1-12.

Clematide, S (2008). An OLIF-based open inflectional resource and yet another morphological system for German. In: Storrer, A; Geyken, A; Siebert, A; Würzner, K M. Text Resources and Lexical Knowledge. Berlin, Germany, 183-194. ISBN 978-3-11-020735-4.

Luder, M; Clematide, S; Distl, B (2008). Ein elektronisches Lexikon im OLIF-Format für die Erzählanalyse. In: XIII. Euralex International Congress, Barcelona, Spain, 15 July 2008 - 19 July 2008, 729-735.

Clematide, S; Amsler, M; Roth, S; Thöny, L; Bünzli, A (2007). CLab - eine web-basierte interaktive Lernplattform für Studierende der Computerlinguistik. In: DeLFI 2007, 5. e-Learning Fachtagung Informatik, 17.-20. September 2007, Siegen, Germany, 2007 - 2007, 301-302.

Klenner, M; Clematide, S; Peric, B (2007). What (the Hell) is Wrong? An Approach to Semi-automatic Construction of Self Correction Tests. In: Workshop on NLP for Educational Resources. In conjunction with RANLP07, Borovets, Bulgaria, 2007 - 2007, 15-22.

Schwitter, R; Rinaldi, F; Clematide, S (2004). The importance of how-questions in technical domains. In: Proc of the Question-Answering workshop of TALN 04, Fez, Morocco, April 2004 - April 2004, 451-460.

Clematide, S (2004). GermaNet und UniNet. LDV Forum, 19(1/2):137-142.

Clematide, S (2002). Selektive Evaluation von robusten Parsern. In: Konvens 2002, 6. Konferenz zur Verarbeitung natürlicher Sprache, Proceedings, Saarbrcken, September 2002 - September 2002, 23-29.

Clematide, S; Volk, M (2001). Linguistische und semantische Annotation eines Zeitungskorpus. In: GLDV-Jahrestagung, Giessen, 28 March 2001 - 30 March 2001, 201-209.

Arnold, T; Clematide, S; Nespeca, R; Roth, J; Volk, M (2001). LUIS - Ein natürlichsprachliches, universitäres Informationssystem. In: Unternehmen Hochschule, Wien, 2001 - 2001, 115-126.

Volk, M; Clematide, S (2001). Learn-filter-apply-forget. Mixed approaches to named entity recognition. In: 6th International Workshop on Applications of Natural Language for Informations Systems, Madrid, Spain, 2001 - 2001.

Curriculum Vitae

Curriculum Vitae, Simon Clematide (PDF, 41 KB)

Forschungsteam und Doktoranden